SNP Profiles matching SPEC 54 /1

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_Input profile	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
1._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
2._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
3._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
4._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
5._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
6._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
7._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
8._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
9._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
10._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
11._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
12._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
13._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
14._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
15._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
16._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	_
17._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	_
18._RUQ_50	_	_	AA	TT	CC	AA	CC	AA	TT	AA	_	AA	CC	TT
19._SPEC_54_/1	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
20._GC-05-063-2-14	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
21._RUQ_50	GG	TT	AA	GT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
1._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
2._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
3._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
4._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
5._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
6._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
7._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
8._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
9._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
10._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
11._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
12._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
13._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
14._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
15._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
16._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
17._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
18._RUQ_50	TT	GG	AA	CC	_	GG	GG	CC	_	_	_	_	AA	CC
19._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
20._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
21._RUQ_50	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AA	CC	X_X	X_X
1._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AA	CC	X_X	X_X
2._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
3._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
4._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
5._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
6._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
7._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
8._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
9._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
10._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
11._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
12._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
13._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
14._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
15._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
16._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
17._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
18._RUQ_50	_	_	_	_	TT	_	_	_	CT	CC	AA	_	X_X	X_X
19._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
20._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
21._RUQ_50	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AG	CC	X_X	X_X

Input profile: SPEC_54_/1

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 5

Dapeng Zhang, 2016

1._SPEC_54_/1 GC-05-162-4-15

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

2._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 2 > FP

Dapeng Zhang, 2016

3._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 3 > FP

Dapeng Zhang, 2016

4._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 4 > FP

Dapeng Zhang, 2016

5._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 2

Dapeng Zhang, 2016

6._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 3

Dapeng Zhang, 2016

7._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 4

Dapeng Zhang, 2016

8._SPEC_54_/1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 1 > FP

Dapeng Zhang, 2016

9._SPEC_54_/1 GC-05-063-2-14

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._SPEC_54_/1 GC-05-063-2-14

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

11._SPEC_54_/1 GC-05-063-2-14

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._SPEC_54_/1 GC-05-162-4-15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

13._SPEC_54_/1 GC-05-162-4-15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._SPEC_54_/1 GC-05-162-4-15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._SPEC_54_/1 GC-05-162-4-15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 1 > FP

Dapeng Zhang, 2016

17._SPEC_54_/1 GC-05-063-2-14

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

18._SPEC_54_/1 RUQ_50

identical
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._SPEC_54_/1

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

20._SPEC_54_/1 GC-05-063-2-14

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

21._SPEC_54_/1 RUQ_50

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520